Wow, finally getting started. 
We downloaded the AutoCAD files available on Marc Zeitlan's Unofficial Cozy Site
I then set up each bulkhead drawing in a file of it's own and took a floppy down to the nearest blueprint shop for full size plots on heavy paper to make full size templates.

Some notes on general methodology:
We had a huge roll of shrink wrap film, so two passes down the table cover the whole thing. At the end of a session the whole mess gets bundled up in a ball. Voila!... a clean table, OK this is Randi's doing; she's the Queen of Neatness, I'm the Dark Mistress of Mess. She'll go as far as to put a wastebasket right next to me (underfoot) but of course I'll fling that trimmed ooey-gooey piece of cloth across the room (please note that I fling NOTHING in the direction of Randi's corvette, see picture above).

Because of the chemicals involved and the heat from exotherms we always put our days waste in a pile on the concrete floor till the next day rather than throw it in the trash dumpster.

We buy large rolls of wide plastic coated butcher paper in the super market. We always use this as our work surface. This stuff peels off after the parts set up and does not leave a wax residue like waxed paper would.

We peel ply everything in sight whether you see it or not. You never know when, where or what you may want to bond to a part in the future. It comes out better and smoother. Short of fine sand blasting there is no way to abrade 100% of a non peel plied surface without cutting through fibers.

We do all tapes and reinforcements on HD aluminum foil. Tape down a piece of foil (get the really HD stuff in wide rolls) dull side up on top of your bench, Do a marker layout on the foil, in the case of complex reinforcements like the hell hole and stuff around the main LG bulkheads it really helps to make a paper pattern, check the origami then transfer this to the foil, mark the, cut lines, bend lines etc. Lay up as many as 4 layers on the foil, cut, slit and fold till it looks like a wallet if needed, put into position and then carefully unfold each panel, smoothing out and pushing out air as you go. There is no need to remove the foil till the lay-up is completely burnished and squeegeed down. The foil prevents the plies from moving around. Peel off the foil and do a final check for bubbles and squeegee some more, peelply. Doing corner tapes this way is quick and easy, especially when you can lay out several on one width of foil, cut with your scissors, pre-fold and place.

When bonding two parts at 90 degrees, we use a Dremel with a ball-end cutter to remove about 1/4" of the foam on the edge of the bulkhead or part to be attached, fill this with flox to have it "key" in to the intersecting bulkhead. This increases the surface area of the bond. 
***We have not data to support our techniques, do at your own risk.

Trimming:
I can't say we ever really got proficient at nailing down the "chewing gum" stage of resin cure and trimming the parts then. This may in part be due to working on a lay-up till late, cleaning up and going to bed. 
Our original  trim technique was one of scissor cutting as near as possible without disturbing the lay-up and dealing with the trimming when it setup. 
But wait, there's great news! Much later we discovered the wonderful Dritz Electric Scissors and found they were perfect for trimming wet cloth. If you go around the part counterclockwise it is possible to trim right to the very edge of the foam; no post cure trimming required. 

If I had a fine blade in the band saw it worked for trimming some parts, watch that the lower side of the lamination is not being pulled away from the foam. I found a table mounted router with a ball bearing carbide laminate trimmer  bit in it was helpful for a lot of the flat parts. 
My ever-present Dremel tool with a sanding drum is always handy but the tool we wish we had acquired as early in the project as possible would be the Fein tool. There is no way to prepare you for the joy this tool will bring you.

Notes About The Parts:
Seat Back-
Other than the rectangular holes you make for the electrical conduits, don't bother to cut the ovals for the control tubes. Where the aileron torque tube holes are specified on the plans is not remotely close. We are glad we heeded other peoples comments on this and only marked where they are supposed to go and did not cut them out. When I got to the point of needing the holes I came up with a nifty method for getting them in right.

Instrument Panel-
Everyone complains it comes out about .100"-.125" short on the bottom edge; check the archives and adjust, easier to trim off than to add.
For the ribs on backside of the instrument panel; bond them in place with flox first and do the upper BID tape between the rib and the panel. Let cure then make some Styrofoam blocks to support the lip. Cover foam with cello tape or duct tape. We held these in place with double sided carpet tape. 

When we started this project we knew nothing about nifty products like the Blue Mountain EFIS/One much less anything about what we would eventually populate our panel with. We could never have known I would eventually end up working for Blue Mountain Avionics and redesigning the hardware. OK, I'll shamelessly admit that I designed the displays to fit and look cool  in our plane... to what extent that was possible to get away with. Only thing is, I did not design the plane to fit the system I came up with. More on that later.
The instrument panel as built per plans is purely for conventional instrumentation. There is a high probability we will cut out the panel from the lower rib up leaving a one inch tab on the fuselage sides to attach the new panel to.  
The instrument panel is an important structural member. When removing material for instruments or modifying the panel this should be kept in mind.

Firewall-
Check the archives and see there is a lot of angst and anger resulting in following the plans method of anchoring these screws... a couple of flats and some flox does not a secure screw make. So we had to go improving the hell out of it. Given this is an aircraft after all, "belt & suspenders" security seems appropriate for any task, but we sort of took it to 'belt & suspenders & rivets and glue...with flox". I think our way was gross overkill and in the end may have its own issues, time will tell. 
So this is how we "improved" ours:
How not to embed the screws in the firewall... 
-use Dremel tool to cut large slot in screw heads.
-cut oversized countersink in Firewall for screws.
-Dremel interconnecting channels in firewall to accommodate pieces of wire.
-weld pieces of wire into slots of screws.
-bury whole mess in flox, put BID over it.

How to bury screws in anything...
-drill appropriate size hole for screw.
-insert Click-Bond screw.
-trace around large screw head.
-use Dremel router attachment to route a small recess.
-drill pattern of 6 holes in head of Click-Bond. 
-clean head of Click-Bond with acetone and flox in position.
-apply 2 play BID patch approximately 2"x2" over screws.
-for higher torque applications, insert rivet into one of the holes previously drilled in the screw head.